SWBA Draft -- 2006 SWBA Draft
| Annual Entry Draft |
| | | | Current | Original | |
| Round | Pick | Overall | Team | Team | Player |
| 1 | 1 | 1 | | CVC | Felix Hernandez |
| 1 | 2 | 2 | SDT | TBW | Jeremy Hermida |
| 1 | 3 | 3 | | CCR | Huston Street |
| 1 | 4 | 4 | | CAC | Prince Fielder |
| 1 | 5 | 5 | DRB | CBB | Jeff Francoeur |
| 1 | 6 | 6 | | ORB | Zach Duke |
| 1 | 7 | 7 | | LMP | Chris Ray |
| 1 | 8 | 8 | | SWR | Francisco Liriano |
| 1 | 9 | 9 | | TCC | Ryan Zimmerman |
| 1 | 10 | 10 | SFQ | PSL | Matt Cain |
| 1 | 11 | 11 | ARA | SDT | Brian McCann |
| 1 | 12 | 12 | | CBF | Jonathan Papelbon |
| 1 | 13 | 13 | | HAC | Andy Marte |
| 1 | 14 | 14 | IVE | DRB | Ervin Santana |
| 1 | 15 | 15 | TBW | ARA | Edwin Encarnacion |
| 1 | 16 | 16 | TBW | MNM | Anthony Reyes |
| 1 | 17 | 17 | TBW | ADS | Justin Verlander |
| 1 | 18 | 18 | PSL | OKS | Cory Sullivan |
| 1 | 19 | 19 | CBF | SCS | Brandon McCarthy |
| 1 | 20 | 20 | | MCO | Dan Johnson |
| 1 | 21 | 21 | CBF | HAZ | Hanley Ramirez |
| 1 | 22 | 22 | | SFQ | Scott Baker |
| 1 | 23 | 23 | TBW | DIA | Kyle Davies |
| 1 | 24 | 24 | LMP | IVE | Andrew Sisco |
| 2 | 1 | 25 | CAC | CVC | Robinson Cano |
| 2 | 2 | 26 | | TBW | Jason Vargas |
| 2 | 3 | 27 | | CCR | Bobby Jenks |
| 2 | 4 | 28 | CVC | CAC | Jeff Mathis |
| 2 | 5 | 29 | LMP | CBB | Hayden Penn |
| 2 | 6 | 30 | | ORB | Matt Murton |
| 2 | 7 | 31 | ARA | LMP | J.J. Hardy |
| 2 | 8 | 32 | MNM | SWR | Aaron Hill |
| 2 | 9 | 33 | PSL | TCC | Hector Carrasco |
| 2 | 10 | 34 | TCC | PSL | Mike Jacobs |
| 2 | 11 | 35 | | SDT | Scott Olsen |
| 2 | 12 | 36 | | CBF | Chien-Ming Wang |
| 2 | 13 | 37 | | HAC | Dustin McGowan |
| 2 | 14 | 38 | IVE | DRB | Ambiorix Burgos |
| 2 | 15 | 39 | LMP | ARA | Yuniesky Betancourt |
| 2 | 16 | 40 | | MNM | Craig Hansen |
| 2 | 17 | 41 | CAC | ADS | Brian N. Anderson |
| 2 | 18 | 42 | PSL | OKS | Ryan Doumit |
| 2 | 19 | 43 | | SCS | Tadahito Iguchi |
| 2 | 20 | 44 | | MCO | Conor Jackson |
| 2 | 21 | 45 | SFQ | HAZ | Chuck James |
| 2 | 22 | 46 | CAC | SFQ | Kelly Johnson |
| 2 | 23 | 47 | ADS | DIA | Clay Hensley |
| 2 | 24 | 48 | CVC | IVE | Ronny Cedeno |
| 3 | 1 | 49 | | CVC | Jonathan Broxton |
| 3 | 2 | 50 | DIA | TBW | Justin Huber |
| 3 | 3 | 51 | | CCR | Brad Thompson |
| 3 | 4 | 52 | | CAC | Edison Volquez |
| 3 | 5 | 53 | LMP | CBB | Lance Niekro |
| 3 | 6 | 54 | | ORB | Emil Brown |
| 3 | 7 | 55 | | LMP | Anderson Hernandez |
| 3 | 8 | 56 | | SWR | Paul Maholm |
| 3 | 9 | 57 | | TCC | Robinson Tejeda |
| 3 | 10 | 58 | | PSL | Wandy Rodriguez |
| 3 | 11 | 59 | | SDT | Tom Gorzelanny |
| 3 | 12 | 60 | | CBF | Manny Delcarmen |
| 3 | 13 | 61 | | HAC | Jeremy Accardo |
| 3 | 14 | 62 | | DRB | Chris Duffy |
| 3 | 15 | 63 | CVC | ARA | Hong-Chih Kuo |
| 3 | 16 | 64 | TBW | MNM | Chad Orvella |
| 3 | 17 | 65 | ARA | ADS | Ryan Garko |
| 3 | 18 | 66 | | OKS | Joey Devine |
| 3 | 19 | 67 | CBF | SCS | Ryan Shealy |
| 3 | 20 | 68 | SFQ | MCO | Willy Aybar |
| 3 | 21 | 69 | CAC | HAZ | Mark Teahen |
| 3 | 22 | 70 | MCO | SFQ | Tim Stauffer |
| 3 | 23 | 71 | TBW | DIA | Mike Morse |
| 3 | 24 | 72 | CAC | IVE | Marcos Carvajal |
| 4 | 1 | 73 | DRB | CVC | Josh Johnson |
| 4 | 2 | 74 | | TBW | Dustin Nippert |
| 4 | 3 | 75 | | CCR | Scott Downs |
| 4 | 4 | 76 | DRB | CAC | Anthony Lerew |
| 4 | 5 | 77 | | CBB | Brandon Medders |
| 4 | 6 | 78 | | ORB | Brad Eldred |
| 4 | 7 | 79 | | LMP | Will Ohman |
| 4 | 8 | 80 | | SWR | Aaron Small |
| 4 | 9 | 81 | PSL | TCC | Chris Spurling |
| 4 | 10 | 82 | MNM | PSL | Omar Quintanilla |
| 4 | 11 | 83 | LMP | SDT | Blaine Boyer |
| 4 | 12 | 84 | HAZ | CBF | Jason Botts |
| 4 | 13 | 85 | | HAC | Juan Padilla |
| 4 | 14 | 86 | | DRB | Adam Wainwright |
| 4 | 15 | 87 | SDT | ARA | Rich Hill |
| 4 | 16 | 88 | | MNM | Sal Fasano |
| 4 | 17 | 89 | | ADS | Shin-Soo Choo |
| 4 | 18 | 90 | ARA | OKS | J.P. Howell |
| 4 | 19 | 91 | TBW | SCS | Brandon Watson |
| 4 | 20 | 92 | | MCO | Ezequiel Astacio |
| 4 | 21 | 93 | MCO | HAZ | Franklin Gutierrez |
| 4 | 22 | 94 | | SFQ | Nate McLouth |
| 4 | 23 | 95 | | DIA | Chris Denorfia |
| 4 | 24 | 96 | | IVE | Seth McClung |
| 5 | 1 | 97 | DRB | CVC | Kelly Shoppach |
| 5 | 2 | 98 | | TBW | Leo Nunez |
| 5 | 3 | 99 | | CCR | Oscar Robles |
| 5 | 4 | 100 | | CAC | Travis Bowyer |
| 5 | 5 | 101 | | CBB | Tony Giarratano |
| 5 | 6 | 102 | | ORB | Geoff Geary |
| 5 | 7 | 103 | ARA | LMP | Shane Victorino |
| 5 | 8 | 104 | | SWR | Brian Shackelford |
| 5 | 9 | 105 | | TCC | Todd Coffey |
| 5 | 10 | 106 | | PSL | Luis Rodriguez |
| 5 | 11 | 107 | | SDT | Adam Stern |
| 5 | 12 | 108 | | CBF | Eude Brito |
| 5 | 13 | 109 | | HAC | Rick White |
| 5 | 14 | 110 | | DRB | Jeff Fiorentino |
| 5 | 15 | 111 | ORB | ARA | Pete Orr |
| 5 | 16 | 112 | | MNM | John Rodriguez |
| 5 | 17 | 113 | | ADS | Rick Helling |
| 5 | 18 | 114 | | OKS | Dana Eveland |
| 5 | 19 | 115 | | SCS | Jason Bergmann |
| 5 | 20 | 116 | | MCO | Brian Moehler |
| 5 | 21 | 117 | SFQ | HAZ | Macay McBride |
| 5 | 22 | 118 | MCO | SFQ | Ben Johnson |
| 5 | 23 | 119 | | DIA | Chip Ambres |
| 5 | 24 | 120 | | IVE | Chris Widger |
| 6 | 1 | 121 | ADS | CVC | Paul McAnulty |
| 6 | 2 | 122 | | TBW | Nelson Cruz |
| 6 | 3 | 123 | | CCR | Scott Munter |
| 6 | 4 | 124 | | CAC | Franquelis Osoria |
| 6 | 5 | 125 | | CBB | Jeff Baker |
| 6 | 6 | 126 | | ORB | D.J. Houlton |
| 6 | 7 | 127 | | LMP | Aaron Guiel |
| 6 | 8 | 128 | | SWR | Pete Walker |
| 6 | 9 | 129 | PSL | TCC | Jack Taschner |
| 6 | 10 | 130 | TCC | PSL | John-Ford Griffin |
| 6 | 11 | 131 | | SDT | Derek Thompson |
| 6 | 12 | 132 | | CBF | Walter Young |
| 6 | 13 | 133 | | HAC | John Wasdin |
| 6 | 14 | 134 | TBW | DRB | C.J. Wilson |
| 6 | 15 | 135 | HAZ | ARA | Eddy Garabito |
| 6 | 16 | 136 | | MNM | Josh Rupe |
| 6 | 17 | 137 | | ADS | Damian Jackson |
| 6 | 18 | 138 | | OKS | Shaun Marcum |
| 6 | 19 | 139 | | SCS | Jason Repko |
| 6 | 20 | 140 | SFQ | MCO | Melky Cabrera |
| 6 | 21 | 141 | MCO | HAZ | Pedro Astacio |
| 6 | 22 | 142 | HAZ | SFQ | Jason Tyner |
| 6 | 23 | 143 | | DIA | Tim Corcoran |
| 6 | 24 | 144 | | IVE | Tim Byrdak |
| 7 | 1 | 145 | | CVC | Joe Saunders |
| 7 | 2 | 146 | | TBW | |
| 7 | 3 | 147 | | CCR | Vance Wilson |
| 7 | 4 | 148 | | CAC | Jermaine Van Buren |
| 7 | 5 | 149 | | CBB | Steve Schmoll |
| 7 | 6 | 150 | | ORB | Russ Springer |
| 7 | 7 | 151 | | LMP | Ken Huckaby |
| 7 | 8 | 152 | | SWR | John Koronka |
| 7 | 9 | 153 | | TCC | Glenn Williams |
| 7 | 10 | 154 | | PSL | Chris Resop |
| 7 | 11 | 155 | | SDT | Yorman Bazardo |
| 7 | 12 | 156 | | CBF | Cla Meredith |
| 7 | 13 | 157 | | HAC | Matt Treanor |
| 7 | 14 | 158 | | DRB | David Cortes |
| 7 | 15 | 159 | HAZ | ARA | Lenny Harris |
| 7 | 16 | 160 | | MNM | Bernie Castro |
| 7 | 17 | 161 | | ADS | Robert Andino |
| 7 | 18 | 162 | | OKS | Roberto Petagine |
| 7 | 19 | 163 | | SCS | Craig Breslow |
| 7 | 20 | 164 | | MCO | Jake Woods |
| 7 | 21 | 165 | | HAZ | Ronny Paulino |
| 7 | 22 | 166 | | SFQ | Alejandro Machado |
| 7 | 23 | 167 | | DIA | Chris Singleton |
| 7 | 24 | 168 | | IVE | |
| 8 | 1 | 169 | | CVC | |
| 8 | 2 | 170 | | TBW | |
| 8 | 3 | 171 | | CCR | Pablo Ozuna |
| 8 | 4 | 172 | | CAC | Shane Costa |
| 8 | 5 | 173 | | CBB | Tony Blanco |
| 8 | 6 | 174 | ARA | ORB | Scott Feldman |
| 8 | 7 | 175 | CCR | LMP | Fernando Cortez |
| 8 | 8 | 176 | | SWR | Marshall McDougall |
| 8 | 9 | 177 | PSL | TCC | |
| 8 | 10 | 178 | TCC | PSL | Chris Bootcheck |
| 8 | 11 | 179 | | SDT | Darrell Rasner |
| 8 | 12 | 180 | | CBF | Joel Peralta |
| 8 | 13 | 181 | | HAC | Bryan Bullington |
| 8 | 14 | 182 | | DRB | Geovany Soto |
| 8 | 15 | 183 | CCR | ARA | Mike Edwards |
| 8 | 16 | 184 | | MNM | Tyler Johnson |
| 8 | 17 | 185 | | ADS | Dan Ortmeier |
| 8 | 18 | 186 | | OKS | Matt Capps |
| 8 | 19 | 187 | | SCS | Royce Ring |
| 8 | 20 | 188 | HAZ | MCO | Jeff Harris |
| 8 | 21 | 189 | SFQ | HAZ | Randy Messenger |
| 8 | 22 | 190 | MCO | SFQ | Freddie Bynum |
| 8 | 23 | 191 | | DIA | John Foster |
| 8 | 24 | 192 | | IVE | |
| 9 | 1 | 193 | | CVC | |
| 9 | 2 | 194 | | TBW | |
| 9 | 3 | 195 | | CCR | Vic Darensbourg |
| 9 | 4 | 196 | | CAC | Paul Phillips |
| 9 | 5 | 197 | | CBB | Ron Flores |
| 9 | 6 | 198 | | ORB | Jeremi Gonzalez |
| 9 | 7 | 199 | CCR | LMP | Carlos Baerga |
| 9 | 8 | 200 | | SWR | Miguel Perez |
| 9 | 9 | 201 | | TCC | Kenny Kelly |
| 9 | 10 | 202 | | PSL | |
| 9 | 11 | 203 | | SDT | Sean Henn |
| 9 | 12 | 204 | | CBF | Keiichi Yabu |
| 9 | 13 | 205 | | HAC | Chris Duncan |
| 9 | 14 | 206 | | DRB | William Bergolla |
| 9 | 15 | 207 | | ARA | Brayan Pena |
| 9 | 16 | 208 | | MNM | Jason Romano |
| 9 | 17 | 209 | | ADS | Cody Ross |
| 9 | 18 | 210 | | OKS | Jonah Bayliss |
| 9 | 19 | 211 | | SCS | Chris Oxspring |
| 9 | 20 | 212 | SFQ | MCO | Ryan Speier |
| 9 | 21 | 213 | MCO | HAZ | Joe Borowski |
| 9 | 22 | 214 | HAZ | SFQ | Kane Davis |
| 9 | 23 | 215 | | DIA | John Gall |
| 9 | 24 | 216 | | IVE | |
| 10 | 1 | 217 | | CVC | |
| 10 | 2 | 218 | | TBW | |
| 10 | 3 | 219 | | CCR | Chad Allen |
| 10 | 4 | 220 | | CAC | Craig Dingman |
| 10 | 5 | 221 | | CBB | Chris Aguila |
| 10 | 6 | 222 | | ORB | Randy Keisler |
| 10 | 7 | 223 | CCR | LMP | Raul Chavez |
| 10 | 8 | 224 | | SWR | Tim Hamulack |
| 10 | 9 | 225 | PSL | TCC | |
| 10 | 10 | 226 | TCC | PSL | |
| 10 | 11 | 227 | | SDT | Choo Freeman |
| 10 | 12 | 228 | | CBF | Mike Esposito |
| 10 | 13 | 229 | | HAC | |
| 10 | 14 | 230 | | DRB | Luke Scott |
| 10 | 15 | 231 | SFQ | ARA | Mike Burns |
| 10 | 16 | 232 | | MNM | |
| 10 | 17 | 233 | | ADS | |
| 10 | 18 | 234 | | OKS | Jon Switzer |
| 10 | 19 | 235 | | SCS | Chris Demaria |
| 10 | 20 | 236 | | MCO | Ben Weber |
| 10 | 21 | 237 | | HAZ | Julio Santana |
| 10 | 22 | 238 | | SFQ | Ray Olmedo |
| 10 | 23 | 239 | | DIA | Brian Cooper |
| 10 | 24 | 240 | | IVE | |